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1

Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering

Matthias Hackl, Tobias Jakobi, Jochen Blom, Daniel Doppmeier, Karina Brinkrolf, Rafael Szczepanowski, Stephan H. Bernhart, Christian Höner zu Siederdissen, Juan A. Hernandez Bort, Matthias Wieser, Ren

Journal:

Journal of Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.81 MB

english, 2011

2

Growth, productivity and protein glycosylation in a CHO EpoFc producer cell line adapted to glutamine-free growth

Michael Taschwer, Matthias Hackl, Juan A. Hernández Bort, Christian Leitner, Niraj Kumar, Urszula Puc, Josephine Grass, Martin Papst, Renate Kunert, Friedrich Altmann, Nicole Borth

Journal:

Journal of Biotechnology

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

3

Host genome integration and giant virus-induced reactivation of the virophage mavirus

Fischer, Matthias G., Hackl, Thomas

Journal:

Year:

2016

Language:

english

File:

PDF, 3.60 MB

english, 2016

4

A screening method to assess biological effects of microRNA overexpression in Chinese hamster ovary cells

Vaibhav Jadhav, Matthias Hackl, Juan A. Hernandez Bort, Matthias Wieser, Eva Harreither, Renate Kunert, Nicole Borth, Johannes Grillari

Journal:

Biotechnology and Bioengineering

Year:

2012

Language:

english

File:

PDF, 405 KB

english, 2012

5

MicroRNAs differentially present in the plasma of HIV elite controllers reduce HIV infection in vitro

Reynoso, Rita, Laufer, Natalia, Hackl, Matthias, Skalicky, Susanna, Monteforte, Rossella, Turk, Gabriela, Carobene, Mauricio, Quarleri, Jorge, Cahn, Pedro, Werner, Roland, Stoiber, Heribert, Grillari-

Journal:

Scientific Reports

Year:

2014

Language:

english

File:

PDF, 1.18 MB

english, 2014

6

Dimerisation of dipiperidinoacetylene: Convenient access to tetraamino‐1,3‐cyclobutadiene and tetraamino‐1,2‐cyclobutadiene metal complexes

Hackl, Ludwig, Petrov, Alex R., Bannenberg, Thomas, Freytag, Matthias, Jones, Peter G., Tamm, Matthias

Journal:

Chemistry - A European Journal

Year:

2019

Language:

english

File:

PDF, 1.40 MB

english, 2019

7

Update â Intoxikationen in der Intensivmedizin

HÃ¼ser, Christoph, Hackl, Gerald, BaumgÃ¤rtel, Matthias

Journal:

DMW - Deutsche Medizinische Wochenschrift

Year:

2020

Language:

german

File:

PDF, 145 KB

german, 2020

8

Gene expression during bacterivorous growth of a widespread marine heterotrophic flagellate

Massana, Ramon, Labarre, Aurelie, LÃ³pez-EscardÃ³, David, Obiol, Aleix, Bucchini, FranÃ§ois, Hackl, Thomas, Fischer, Matthias G., Vandepoele, Klaas, Tikhonenkov, Denis V., Husnik, Filip, Keeling, Patr

Journal:

The ISME Journal

Year:

2020

File:

PDF, 1.55 MB

2020

9

Conserved MicroRNAs in Chinese hamster ovary cell lines

Kathryn C. Johnson, Nitya M. Jacob, Peter Morin Nissom, Matthias Hackl, Lim Hseuh Lee, Miranda Yap, Wei-Shou Hu

Journal:

Biotechnology and Bioengineering

Year:

2011

Language:

english

File:

PDF, 384 KB

english, 2011

10

GiSAO.db: a database for ageing research

Edith Hofer, Gerhard T Laschober, Matthias Hackl, Gerhard G Thallinger, Günter Lepperdinger, Johannes Grillari, Pidder Jansen-Dürr, Zlatko Trajanoski

Journal:

Year:

2011

Language:

english

File:

PDF, 693 KB

english, 2011

11

Next-generation sequencing of the CHO cell transcriptome

Jennifer Becker, Christina Timmermann, Tobias Jakobi, Oliver Rupp, Rafael Szczepanowski, Matthias Hackl, Alexander Goesmann, Andreas Tauch, Nicole Borth, Johannes Grillari, Alfred Pühler, Thomas Noll,

Journal:

BMC Proceedings

Year:

2011

Language:

english

File:

PDF, 134 KB

english, 2011

12

Comparison of different scoring methods for assessing the nutritional status of hospitalised patients

Oliver Galvan, Michael Joannidis, Andreas Widschwendter, Hugo Bonatti, Georg Matthias Sprinzl, Peter Rehak, Doris Balogh, Johann Michael Hackl

Journal:

Wiener klinische Wochenschrift

Year:

2004

Language:

english

File:

PDF, 96 KB

english, 2004

13

miR-17–92 cluster: ups and downs in cancer and aging

Johannes Grillari, Matthias Hackl, Regina Grillari-Voglauer

Journal:

Year:

2010

Language:

english

File:

PDF, 200 KB

english, 2010

14

miR-17, miR-19b, miR-20a, and miR-106a are down-regulated in human aging

Matthias Hackl, Stefan Brunner, Klaus Fortschegger, Carina Schreiner, Lucia Micutkova, Christoph Mück, Gerhard T. Laschober, Günter Lepperdinger, Natalie Sampson, Peter Berger, Dietmar Herndler-Brands

Journal:

Year:

2010

Language:

english

File:

PDF, 215 KB

english, 2010

15

Phosphorylation by casein kinase 2 induces PACS-1 binding of nephrocystin and targeting to cilia

Schermer, Bernhard, Höpker, Katja, Omran, Heymut, Ghenoiu, Cristina, Fliegauf, Manfred, Fekete, Andrea, Horvath, Judit, Köttgen, Michael, Hackl, Matthias, Zschiedrich, Stefan

Journal:

The EMBO Journal

Year:

2005

Language:

english

File:

PDF, 866 KB

english, 2005

16

Pseudogap and Superconducting Gap in YBa2Cu3o6+x: A Raman Study

Matthias Opel, Martin Götzinger, Christian Hoffmann, Ralf Nemetschek, Richard Philipp, Francesca Venturini, Rudi Hackl, Andreas Erb, Eric Walker

Journal:

Journal of Low Temperature Physics

Year:

1999

Language:

english

File:

PDF, 454 KB

english, 1999

17

Traumatic intracranial hemorrhages in facial fracture patients: review of 2,195 patients

Matthias Hohlrieder, Josef Hinterhoelzl, Hanno Ulmer, Christiane Lang, Wolfgang Hackl, Andreas Kampfl, Arnulf Benzer, Erich Schmutzhard, Robert Gassner

Journal:

Intensive Care Medicine

Year:

2003

Language:

english

File:

PDF, 134 KB

english, 2003

18

Dynamic mRNA and miRNA profiling of CHO-K1 suspension cell cultures

Dr. Juan A. Hernández Bort, Matthias Hackl, Helga Höflmayer, Vaibhav Jadhav, Eva Harreither, Niraj Kumar, Wolfgang Ernst, Johannes Grillari, Nicole Borth

Journal:

Biotechnology Journal

Year:

2012

Language:

english

File:

PDF, 814 KB

english, 2012

19

Utilization and evaluation of CHO-specific sequence databases for mass spectrometry based proteomics

Paula Meleady, Raimund Hoffrogge, Michael Henry, Oliver Rupp, Juan Hernandez Bort, Colin Clarke, Karina Brinkrolf, Shane Kelly, Benjamin Müller, Padraig Doolan, Matthias Hackl, Tim Frederik Beckmann,

Journal:

Biotechnology and Bioengineering

Year:

2012

Language:

english

File:

PDF, 373 KB

english, 2012

20

Upregulation of miR-24 is associated with a decreased DNA damage response upon etoposide treatment in highly differentiated CD8+ T cells sensitizing them to apoptotic cell death

Stefan Brunner, Dietmar Herndler-Brandstetter, Christoph R. Arnold, Gerrit Jan Wiegers, Andreas Villunger, Matthias Hackl, Johannes Grillari, María Moreno-Villanueva, Alexander Bürkle, Beatrix Grubeck

Journal:

Year:

2012

Language:

english

File:

PDF, 518 KB

english, 2012

21

ITS2 Database IV: Interactive taxon sampling for internal transcribed spacer 2 based phylogenies

Christian Koetschan, Thomas Hackl, Tobias Müller, Matthias Wolf, Frank Förster, Jörg Schultz

Journal:

Molecular Phylogenetics and Evolution

Year:

2012

Language:

english

File:

PDF, 370 KB

english, 2012

22

Hackl and Vojta Reply:

Hackl, Andreas, Vojta, Matthias

Journal:

Physical Review Letters

Year:

2011

Language:

english

File:

PDF, 44 KB

english, 2011

23

Zeeman-Driven Lifshitz Transition: A Model for the Experimentally Observed Fermi-Surface Reconstruction in

Hackl, Andreas, Vojta, Matthias

Journal:

Physical Review Letters

Year:

2011

Language:

english

File:

PDF, 278 KB

english, 2011

24

Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing

Jennifer Becker, Matthias Hackl, Oliver Rupp, Tobias Jakobi, Jessica Schneider, Rafael Szczepanowski, Thomas Bekel, Nicole Borth, Alexander Goesmann, Johannes Grillari, Christian Kaltschmidt, Thomas N

Journal:

Journal of Biotechnology

Year:

2011

Language:

english

File:

PDF, 1.31 MB

english, 2011

25

Computational identification of microRNA gene loci and precursor microRNA sequences in CHO cell lines

Matthias Hackl, Vaibhav Jadhav, Tobias Jakobi, Oliver Rupp, Karina Brinkrolf, Alexander Goesmann, Alfred Pühler, Thomas Noll, Nicole Borth, Johannes Grillari

Journal:

Journal of Biotechnology

Year:

2012

Language:

english

File:

PDF, 774 KB

english, 2012

26

Traumatic intracranial haemorrhage in conscious patients with facial fractures – A review of 1959 cases

Frank Kloss, Klaus Laimer, Matthias Hohlrieder, Hanno Ulmer, Wolfgang Hackl, Arnulf Benzer, Erich Schmutzhard, Robert Gassner

Journal:

Journal of Cranio-Maxillofacial Surgery

Year:

2008

Language:

english

File:

PDF, 124 KB

english, 2008

27

Construction of a Stability Landscape of the CH3 Domain of Human IgG1 by Combining Directed Evolution with High Throughput Sequencing

Michael W. Traxlmayr, Christoph Hasenhindl, Matthias Hackl, Gerhard Stadlmayr, Jakub D. Rybka, Nicole Borth, Johannes Grillari, Florian Rüker, Christian Obinger

Journal:

Journal of Molecular Biology

Year:

2012

Language:

english

File:

PDF, 1.37 MB

english, 2012

28

miRNAs – pathway engineering of CHO cell factories that avoids translational burdening

Matthias Hackl, Nicole Borth, Johannes Grillari

Journal:

Trends in Biotechnology

Year:

2012

Language:

english

File:

PDF, 106 KB

english, 2012

29

Slow slip events in Costa Rica detected by continuous GPS observations, 2002-2011

Jiang, Yan, Wdowinski, Shimon, Dixon, Timothy H., Hackl, Matthias, Protti, Marino, Gonzalez, Victor

Journal:

Geochemistry, Geophysics, Geosystems

Year:

2012

Language:

english

File:

PDF, 4.37 MB

english, 2012

30

SPIE Proceedings [SPIE Photonics West '96 - San Jose, CA (Saturday 27 January 1996)] Spectroscopic Studies of Superconductors - Electronic Raman scattering in copper-oxide superconductors and related compounds

Hackl, Rudi U., Krug, Gaby, Nemetschek, Ralf, Opel, Matthias, Stadlober, Barbara, Bozovic, Ivan, van der Marel, Dirk

Year:

1996

Language:

english

File:

PDF, 558 KB

english, 1996

31

Prediction of transcribed PIWI-interacting RNAs from CHO RNAseq data

Gerstl, Matthias Peter, Hackl, Matthias, Graf, Alexandra Bettina, Borth, Nicole, Grillari, Johannes

Journal:

Journal of Biotechnology

Year:

2013

Language:

english

File:

PDF, 1.23 MB

english, 2013

32

Kondo volume collapse, Kondo breakdown, and Fermi surface transitions in heavy-fermion metals

Hackl, Andreas, Vojta, Matthias

Journal:

Physical Review B

Year:

2008

Language:

english

File:

PDF, 710 KB

english, 2008

33

Velocity covariance in the presence of anisotropic time correlated noise and transient events in GPS time series

Hackl, Matthias, Malservisi, Rocco, Hugentobler, Urs, Jiang, Yan

Journal:

Journal of Geodynamics

Year:

2013

Language:

english

File:

PDF, 2.20 MB

english, 2013

34

Tracking the fate of glomerular epithelial cells in vivo using serial multiphoton imaging in new mouse models with fluorescent lineage tags

Hackl, Matthias J, Burford, James L, Villanueva, Karie, Lam, Lisa, Suszták, Katalin, Schermer, Bernhard, Benzing, Thomas, Peti-Peterdi, János

Journal:

Nature Medicine

Year:

2013

Language:

english

File:

PDF, 2.60 MB

english, 2013

35

Identification of process relevant miRNA in CHO cell lines - Process profiling reveals interesting targets for cell line engineering

Stiefel, Fabian, Hackl, Matthias, Grilliari, Johannes, Hesse, Friedemann

Journal:

BMC Proceedings

Year:

2013

Language:

english

File:

PDF, 244 KB

english, 2013

36

Eignung und Erforderlichkeit einer Schonzeitaufhebung gemäß den §§22 Abs. 1 S. 3 BJagdG

Stiefel, Fabian, Hackl, Matthias, Grilliari, Johannes, Hesse, Friedemann

Journal:

Natur und Recht

Year:

2013

Language:

german

File:

PDF, 323 KB

german, 2013

37

High rate of FGFR1 amplifications in brain metastases of squamous and non-squamous lung cancer

Preusser, Matthias, Berghoff, Anna S., Berger, Walter, Ilhan-Mutlu, Aysegül, Dinhof, Carina, Widhalm, Georg, Dieckmann, Karin, Wöhrer, Adelheid, Hackl, Monika, von Deimling, Andreas, Streubel, Berthol

Journal:

Year:

2014

Language:

english

File:

PDF, 474 KB

english, 2014

38

CHO microRNA engineering is growing up: Recent successes and future challenges

Jadhav, Vaibhav, Hackl, Matthias, Druz, Aliaksandr, Shridhar, Smriti, Chung, Cheng-Yu, Heffner, Kelley M., Kreil, David P., Betenbaugh, Mike, Shiloach, Joseph, Barron, Niall, Grillari, Johannes, Borth

Journal:

Biotechnology Advances

Year:

2013

Language:

english

File:

PDF, 833 KB

english, 2013

39

Table of contents

Jadhav, Vaibhav, Hackl, Matthias, Klanert, Gerald, Hernandez Bort, Juan A., Kunert, Renate, Grillari, Johannes, Borth, Nicole

Journal:

Journal of Vascular Surgery

Year:

2004

Language:

english

File:

PDF, 27 KB

english, 2004

40

Stable overexpression of miR-17 enhances recombinant protein production of CHO cells

Jadhav, Vaibhav, Hackl, Matthias, Klanert, Gerald, Hernandez Bort, Juan A., Kunert, Renate, Grillari, Johannes, Borth, Nicole

Journal:

Journal of Biotechnology

Year:

2014

Language:

english

File:

PDF, 1.23 MB

english, 2014

41

Does stimulation with human gonadotropins and gonadotropin-releasing hormone agonist enhance and accelerate the developmental capacity of oocytes in human ovarian tissue xenografted into severe combined immunodeficient mice?

Lotz, Laura, Schneider, Heike, Hackl, Janina, Wachter, David, Hoffmann, Inge, Jurgons, Roland, Beckmann, Matthias W., Dittrich, Ralf

Journal:

Fertility and Sterility

Year:

2014

Language:

english

File:

PDF, 1.51 MB

english, 2014

42

Analysis of microRNA transcription and post-transcriptional processing by Dicer in the context of CHO cell proliferation

Hackl, Matthias, Jadhav, Vaibhav, Klanert, Gerald, Karbiener, Michael, Scheideler, Marcel, Grillari, Johannes, Borth, Nicole

Journal:

Journal of Biotechnology

Year:

2014

Language:

english

File:

PDF, 1.61 MB

english, 2014

43

ALK gene translocations and amplifications in brain metastases of non-small cell lung cancer

Preusser, Matthias, Berghoff, Anna S., Ilhan-Mutlu, Ayseguel, Magerle, Manuel, Dinhof, Carina, Widhalm, Georg, Dieckmann, Karin, Marosi, Christine, Wöhrer, Adelheid, Hackl, Monika, Zöchbauer-Müller, S

Journal:

Year:

2013

Language:

english

File:

PDF, 832 KB

english, 2013

44

Integrative ‘-omic’ approach to explore molecular mechanism of miRNA engineered Chinese hamster ovary cell

Jadhav, Vaibhav, Hackl, Matthias, Baycin-Hizal, Deniz, Klanert, Gerald, Betenbaugh, Michael, Grillari, Johannes, Borth, Nicole

Journal:

New Biotechnology

Year:

2014

Language:

english

File:

PDF, 69 KB

english, 2014

45

Identification of microRNAs specific for high producer CHO cell lines using steady-state cultivation

Andreas Maccani,Matthias Hackl…

Journal:

Applied Microbiology and Biotechnology

Year:

2014

Language:

english

File:

PDF, 873 KB

english, 2014

46

The impact of storage effects in biobanks on biomarker discovery in systems biology studies

Balasubramanian, Raji, Mueller, Laurin, Kugler, Karl, Hackl, Werner, Pleyer, Lisa, Dehmer, Matthias, Graber, Armin

Journal:

Year:

2010

Language:

english

File:

PDF, 934 KB

english, 2010

47

Amplification and overexpression of CMET is a common event in brain metastases of non-small cell lung cancer

Preusser, Matthias, Streubel, Berthold, Berghoff, Anna S, Hainfellner, Johannes A, von Deimling, Andreas, Widhalm, Georg, Dieckmann, Karin, Wöhrer, Adelheid, Hackl, Monika, Zielinski, Christoph, Birne

Journal:

Year:

2014

Language:

english

File:

PDF, 406 KB

english, 2014

48

Endogenous microRNA clusters outperform chimeric sequence clusters in Chinese hamster ovary cells

Klanert, Gerald, Jadhav, Vaibhav, Chanoumidou, Konstantina, Grillari, Johannes, Borth, Nicole, Hackl, Matthias

Journal:

Biotechnology Journal

Year:

2014

Language:

english

File:

PDF, 722 KB

english, 2014

49

Nernst-effect anisotropy as a sensitive probe of Fermi-surface distortions from electron-nematic order

Hackl, Andreas, Vojta, Matthias

Journal:

Physical Review B

Year:

2009

Language:

english

File:

PDF, 216 KB

english, 2009

50

Nonequilibrium magnetization dynamics of ferromagnetically coupled Kondo spins

Hackl, Andreas, Vojta, Matthias, Kehrein, Stefan

Journal:

Physical Review B

Year:

2009

Language:

english

File:

PDF, 595 KB

english, 2009